Snow Leopard: What's gone where

Snow Leopard: What's gone where | Mac OS X | Macworld

Bioinformatics software and tools

bamtools:
API and toolkit for reading, writing, and manipulating BAM (genome alignment) files
http://github.com/pezmaster31/bamtools/

bedtools:
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage.
http://code.google.com/p/bedtools/

MAC OS X software and tools

GIT:
Git is distributed version control system focused on speed, effectivity and real-world usability on large projects.
http://git-scm.com/

Public Galaxy sites

Hannon Laboratory:
http://codex.cshl.org/publicgalaxy/root/

Install/upgrade PHP with Apache2

wget php-5.3.3.tar.gz
tar -zxvf php-5.3.3.tar.gz
cd php-5.3.3
./configure  --with-mysql=/usr/local/mysql --with-zlib --with-apxs2=/usr/local/apache2/bin/apxs --with-bz2 --with-curl --enable-soap --enable-sockets --with-xmlrpc --enable-zip --with-gd --enable-calendar --enable-ctype --enable-ftp --enable-gd-native-ttf --enable-magic-quotes --with-ldap --enable-sqlite-utf8 --enable-pdo --with-jpeg-dir=/usr/local --with-png-dir=/usr/local --with-mcrypt --enable-mbstring
make
make install
cp php.ini-dist /usr/local/lib/php.ini
sudo /usr/local/apache2/bin/apachectl stop
sudo /usr/local/apache2/bin/apachectl start
sudo ln -s /usr/local/bin/php /usr/bin/php

Making R64 the default gui in MAC OS X

[R-SIG-Mac] making R64 the default gui