Wednesday, April 6, 2011

Tophat, Cufflinks and SamTools - Bioinformatics in BioMed

 

Converter for vcf to bed format - SEQanswers

sed -e 's/chr//' file.vcf | awk '{OFS="\t"; if (!/^#/){print $1,$2-1,$2,$4"/"$5,"+"}}'

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